Web Reference: Learn how to read, parse, analyze, and write FASTA files in Python using the Biopython library with practical code examples. Dec 14, 2013 · Part of the problem is that you're trying to mix two different ways of reading the file - you are iterating over the lines using for line in f1 and .next(). Also, if you are working with FASTA files I recommend using Biopython: it makes working with collections of sequences much easier. Building on our ability to open and print the contents of a FASTA file in python, let's build a FASTA parser step by step. Our goal will be to take the contents of the fasta file,...
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